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When there is non-negligible variation between the effects of different studies, the type I error rate is elevated if using the fixed effect model, so the random effects model should be used instead.30 The choice R428 in vivo between the fixed effect and random effects models was made based on testing the heterogeneity between studies via the commonly-used statistics I2 and Cochran��s Q31. If I2 was higher than 50% and the P-value from the Chi-square test for Cochran��s Q was smaller than 0.10, we regarded it as an indication of high inter-study heterogeneity and used the random effects model; otherwise the fixed effect model was used. Begg��s funnel plot was made and Egger��s test performed to account for potential publication bias.32,33 In the funnel plot, the treatment effect (x-axis) was plotted against its standard error (y-axis). We expected that the studies would be distributed symmetrically about the pooled effect size if there were no publication bias, while the existence of publication bias would generate an asymmetric plot, and the significance of asymmetry could be evaluated by Egger��s test. Results CDKN3 is differentially expressed among normal, ADC and SCC tissues Given the contradictory observations on whether CDKN3 tends to be up-regulated or down-regulated in tumors and the possibility of its behavior being context-dependent, we compared the expression levels of CDKN3 among three tissue types: normal, ADC and SCC. We searched the preliminarily-filtered datasets for those with sample size >20 for each of the three types, and Hou et al��s study34 was selected (Table 1, Y? in column ��ADC >20 & SCC >20��). In this E-64 dataset, by comparing CDKN3 expression across normal, ADC and SCC lung tissues, we found that both ADC and SCC had significantly higher CDKN3 expression levels (Fig. 1), suggesting that CDKN3 is up-regulated in ADC and SCC compared to normal samples. Intriguingly, there was also a drastic difference in CDKN3 expression between ADC and SCC, with SCC significantly higher than ADC. Figure 1 Box plots of CDKN3 expression levels in normal tissues, ADC samples and SCC samples. Comparison among the three groups was made by the commonly used parametric method, one-way ANOVA with Tukey test, as well as a nonparametric method, Kruskal-Wallis JQ1 purchase test ... Differential expression of CDKN3 between ADC and SCC is corroborated by meta-analysis To confirm that higher expression of CDKN3 in SCC compared to ADC was a generalizable observation, we performed a meta-analysis for CDKN3 differential expression. Datasets with both SCC and ADC samples were used in this analysis (Table 1, column ��ADC & SCC��). Here, I2 = 61.9% .50% and Cochran��s Q-test P = 0.0017